Recorded: 16 May 2004
I think that there are two areas that are of major interest from my perspective at the moment. One is the application of sequencing to discover new organisms. I think the process of environmental sequencing where people are going out and collecting samples from the environment and using sequencing to discover organisms and new genes in that environment is tremendously powerful.
The other area that I think is going to really develop is the way we understand mammalian genomes. We’re going to start to look at sequences that are functionally important other than genes in the genome. I think over the next three to five years it’s going to be a huge amount of data emerging on that.
Working at the Sanger Centre, Dunham heads the team, which sequenced human chromosome 22. He is interested in uses of human chromosome 22 as a model system for genomic analysis. Chromosome 22 represents about 1% of the whole genome but is a relatively gene rich chromosome. As such it is a tractable model system for a number of genome-wide studies.
Dunham’s initial work was in comprising physical maps in yeast artificial chromosomes (YACs) to produce an extensive YAC map, which served as the backbone for future production of the DNA sequence.
From 1996-1999 he focused on bringing the sequencing of human chromosome 22 to completion. This was achieved with the publication of the completed sequence and its analysis (Dunham et al. 1999). At the same time the group was responsible for establishing a benchmark level of gene annotation on the sequence. Currently chromosome 22 represents the best-annotated region of the human genome, and provides an excellent model system to develop functional genomic approaches. He was the leader of the consortium of four sequencing groups and numerous collaborators.
His team’s future research interests build on the knowledge of human chromosome 22 as a defined subset of the human genome to develop approaches to studying gene expression and networks at the mRNA and protein level. These include microarray expression analysis, cloning of tagged genes and expression of their proteins, development of phage antibody resources, and study of protein intracellular localization.
Dunham was formerly a Research Fellow and a Postdoctoral Research Fellow at Guys Campus in London.
The BBC interviewed Dunham:
Computer modeling suggests there may be as many as 1,000 genes on chromosome 22, but even this is but a small fraction of the estimated 60,000 to 100,000 genes in our cells.
Human disorders "One down, the others to go," said Ian Dunham, a biochemist at the Sanger Centre in Cambridge, UK, and lead author on the scientific paper in the journal Nature that announces the genetics landmark. "It's a great relief to have it finished."
Mutations to genes along chromosome 22 contribute to heart defects, immune system disorders, cancers, and mental retardation. A gene linked to schizophrenia is also thought to reside somewhere on chromosome 22.